Vaccination Trials Against Bovine Herpesvirus-1

Veterinary Research Communications -     

Pollution Bioindicators: Statistical Analysis of a Case Study

In this paper a three-step procedure is proposed to deal with ecological data, usually very complex in their treatment. The three steps – exploratory, confirmatory, and modelling phases – reflect the different methodological approaches necessary in each phase of the study. To illustrate the methodology, a case study is proposed, concerning the suitability of plants as pollution bioindicators. Samples of differently aged Pinus pinea L. needles were collected throughout 1 year in three different locations, whose human disturbance was known to be different. In the samples some morphological and functional parameters were measured, whose relation with the stress was already known. The exploratory analysis suggested pollution with human origin, the needle’s age, and the environmental conditions as the main factors of influence of damage. The confirmatory analysis confirmed both site and age as main factors and occasionally the sampling date. On this basis, some models were estimated separately for each site: models that best described the damage as function of age resulted non-linear and some of them with seasonal fluctuations. As a result, whereas the models described well enough the pollution temporal variation, the difference of pollution in the sites was best described by the different values of the models parameters in the different sites. In short, different pollution conditions are described better by the damage trend than by the individual measures. The three-step procedure resulted of high utility in outlining the most interesting relations to investigate through the modelling, the opportunity to model the indicators variation along time separately for each site, and to introduce the seasonal variation in some models.     

Global phylogeography of the smooth hammerhead shark: Glacial refugia and historical migration patterns

1. Extreme climate changes during the Cenozoic Era strengthened different biogeographical barriers that decreased the connectivity among populations, triggering lineage diversification of different species worldwide.
2. The mitochondrial DNA control region was employed to explore the phylogeography of Sphyrna zygaena, a globally distributed species threatened by unsustainable, illegal, unreported and unregulated fisheries triggered by the international shark fin trade. It is listed as ‘Vulnerable’ by the IUCN Red List and its trade is regulated by CITES Appendix II.
3. Only 13 haplotypes were found with low genetic diversity levels (hd = 0.686 ± 0.014; π = 0.00206 ± 0.00004) compared with other species of the Sphyrnidae family. The species has a very strong phylogeographic population structure among the Atlantic, Indian and Pacific Oceans (Φ_ST = 0.79132). Worldwide, there are six distinct populations with some haplotype sharing.
4. These populations are probably connected by a stepping-stone dispersal of a small number of migrants per generation from the Indo-Pacific towards the Atlantic. Modelling suggests that S. zygaena diverged into two lineages around 6.96 million years ago which have been isolated in glacial refuges in the Atlantic and Indo-Pacific oceans; and after deglaciation, a population expansion probably permitted secondary contact.
5. Conservation plans to establish differentiated management units should be adopted in each of the identified populations. Among these, the Eastern Central Atlantic and West Indo-Pacific are the most important areas for the species considering the historical migration routes that act as a bridge connecting the Atlantic and Indo-Pacific Oceans while the Gulf of Guinea connects the Atlantic populations. Still, further studies are required to know if these populations are also linked with nursery areas for the species.
6. The results herein can help to delimit the main evolutionarily significant units to implement effective policies to establish differentiated management units as starting points to genetic monitoring programmes for Sphyrna zygaena.